Getting and Writing Semantic Mappings

I/O functions for SeMRA.

Functions

from_bioontologies(prefix[, confidence])	Get mappings from a given ontology via bioontologies.
from_cache_df(path, source_prefix, *[, ...])	Get mappings from a pyobo-flavored cache file.
from_digraph(graph)	Extract mappings from a simple directed graph data model.
from_jsonl()	Read a list of Mapping objects from a JSONL file.
from_multidigraph(graph)	Extract mappings from a multi-directed graph data model.
from_pickle(path)	Read the mappings from a pickle.
from_pyobo(prefix[, target_prefix, ...])	Get mappings from a given ontology via pyobo.
from_sssom(path, *[, mapping_set_id, ...])	Get mappings from a path to a SSSOM TSV file.
from_sssom_df(df, *[, mapping_set_id, ...])	Get mappings from a SSSOM dataframe.
get_sssom_df(mappings, *[, add_labels, prune])	Get a SSSOM dataframe.
to_digraph(mappings)	Convert mappings into a simple directed graph data model.
to_multidigraph(mappings, *[, progress])	Convert mappings into a multi directed graph data model.
write_jsonl()	Write a list of Pydantic objects into a JSONL file.
write_neo4j(mappings, directory, *[, ...])	Write all files needed to construct a Neo4j graph database from a set of mappings.
write_pickle(mappings, path)	Write the mappings as a pickle.
write_sssom()	Export mappings as an SSSOM file (could be lossy).