Configuration
=============

.. currentmodule:: semra.pipeline

.. autoclass:: Configuration
   :show-inheritance:

   .. rubric:: Attributes Summary

   .. autosummary::

      ~Configuration.configuration_path
      ~Configuration.model_config
      ~Configuration.priority_counts_path
      ~Configuration.priority_graph_path
      ~Configuration.priority_jsonl_path
      ~Configuration.priority_pickle_path
      ~Configuration.priority_sssom_path
      ~Configuration.processed_counts_path
      ~Configuration.processed_graph_path
      ~Configuration.processed_jsonl_path
      ~Configuration.processed_landscape_histogram_path
      ~Configuration.processed_landscape_upset_path
      ~Configuration.processed_neo4j_name
      ~Configuration.processed_neo4j_path
      ~Configuration.processed_pickle_path
      ~Configuration.processed_sssom_path
      ~Configuration.raw_counts_path
      ~Configuration.raw_graph_path
      ~Configuration.raw_jsonl_path
      ~Configuration.raw_neo4j_name
      ~Configuration.raw_neo4j_path
      ~Configuration.raw_pickle_path
      ~Configuration.raw_sssom_path
      ~Configuration.readme_path
      ~Configuration.source_summary_path
      ~Configuration.stats_path

   .. rubric:: Methods Summary

   .. autosummary::

      ~Configuration.cli
      ~Configuration.ensure_zenodo
      ~Configuration.from_prefixes
      ~Configuration.get_cli
      ~Configuration.get_hydrated_subsets
      ~Configuration.get_mappings
      ~Configuration.has_priority_path
      ~Configuration.has_processed_path
      ~Configuration.has_raw_path
      ~Configuration.infer_priority
      ~Configuration.read_priority_mappings
      ~Configuration.read_processed_mappings
      ~Configuration.read_raw_mappings
      ~Configuration.upload_zenodo
      ~Configuration.zenodo_url

   .. rubric:: Attributes Documentation

   .. autoattribute:: configuration_path
   .. autoattribute:: model_config
   .. autoattribute:: priority_counts_path
   .. autoattribute:: priority_graph_path
   .. autoattribute:: priority_jsonl_path
   .. autoattribute:: priority_pickle_path
   .. autoattribute:: priority_sssom_path
   .. autoattribute:: processed_counts_path
   .. autoattribute:: processed_graph_path
   .. autoattribute:: processed_jsonl_path
   .. autoattribute:: processed_landscape_histogram_path
   .. autoattribute:: processed_landscape_upset_path
   .. autoattribute:: processed_neo4j_name
   .. autoattribute:: processed_neo4j_path
   .. autoattribute:: processed_pickle_path
   .. autoattribute:: processed_sssom_path
   .. autoattribute:: raw_counts_path
   .. autoattribute:: raw_graph_path
   .. autoattribute:: raw_jsonl_path
   .. autoattribute:: raw_neo4j_name
   .. autoattribute:: raw_neo4j_path
   .. autoattribute:: raw_pickle_path
   .. autoattribute:: raw_sssom_path
   .. autoattribute:: readme_path
   .. autoattribute:: source_summary_path
   .. autoattribute:: stats_path

   .. rubric:: Methods Documentation

   .. automethod:: cli
   .. automethod:: ensure_zenodo
   .. automethod:: from_prefixes
   .. automethod:: get_cli
   .. automethod:: get_hydrated_subsets
   .. automethod:: get_mappings
   .. automethod:: has_priority_path
   .. automethod:: has_processed_path
   .. automethod:: has_raw_path
   .. automethod:: infer_priority
   .. automethod:: read_priority_mappings
   .. automethod:: read_processed_mappings
   .. automethod:: read_raw_mappings
   .. automethod:: upload_zenodo
   .. automethod:: zenodo_url